morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_55409

Gene IDMLOC_55409
Source Contig contig_399404

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_55409 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	0.406282	0.523495	0.54883	0
LEA	Shoots from the seedlings (10 cm shoot stage)	0.986736	1.6859	0.807491	0
INF1	Young developing inflorescences (5mm)	0.914796	1.09931	2.26987	0
INF2	Developing inflorescences (1-1.5 cm)	0.724912	0.532648	1.16031	0
ROO	Roots from the seedlings (10 cm shoot stage)	2.012	0.937078	1.23372	0
NOD	Developing tillers at six leaf stage, 3rd internode	0.958089	0.812836	1.17801	0
CAR5	Developing grain, bracts removed (5 DPA)	0.896944	0.643671	0.791772	0
CAR15	Developing grain, bracts removed (15 DPA)	0.186358	0.384117	0.275955	0

CDS Structure of MLOC_55409

Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by AK364404

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK364404	CUST_13716_PI427708083	None	None	None
MLOC_1185.1	None	Available	None	contig_110239 (Mapped)
MLOC_26913.1	None	Available	None	contig_1789633 (Mapped)
MLOC_29435.1	None	Available	None	contig_200588 (Mapped)
MLOC_30927.1	None	Available	None	contig_2140383 (Not mapped)
MLOC_31022.1	None	Available	Available	contig_214990 (Not mapped)
MLOC_31598.1	None	Available	None	contig_2204010 (Mapped)
MLOC_32861.1	None	Available	None	contig_232528 (Mapped)
MLOC_43458.2	None	Available	None	contig_270487 (Mapped)
MLOC_48327.1	None	Available	None	contig_32140 (Not mapped)
MLOC_55409.1	None	Available	None	contig_399404 (Not mapped)
MLOC_678.1	None	Available	None	contig_1049757 (Not mapped)
MLOC_74634.1	None	Available	None	contig_662344 (Not mapped)
MLOC_78888.1	None	Available	None	contig_823280 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-