MLOC_55407 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.409124.211275.282044.85161
LEAShoots from the seedlings (10 cm shoot stage)3.648254.419524.730563.39738
INF1Young developing inflorescences (5mm)5.261716.174536.623594.94004
INF2Developing inflorescences (1-1.5 cm)4.728255.643465.818885.62925
ROORoots from the seedlings (10 cm shoot stage)6.258666.319799.973787.65146
NODDeveloping tillers at six leaf stage, 3rd internode8.979729.1629116.82830.7885
CAR5Developing grain, bracts removed (5 DPA)6.424367.0027.021526.52422
CAR15Developing grain, bracts removed (15 DPA)2.766182.000661.596845.1481



CDS Structure of MLOC_55407






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55407.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363857NoneNoneNoneNone
MLOC_55407.2CUST_3410_PI427708080AvailableAvailablecontig_39939 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g32590.1 -3 2e-122 360 190/264 (72%) 13105.m03359 protein methyltransferase, putative, expressed
TAIR PP10 AT3G60910.1 -3 2e-77 243 130/235 (55%) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:22501727-22503182 FORWARD LENGTH=252