- Predicted Gene MLOC_55396
MLOC_55396 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 16.9663 | 14.1526 | 13.79 | 15.083 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 25.6043 | 26.1486 | 26.805 | 21.5393 |
| INF1 | Young developing inflorescences (5mm) | 9.10038 | 9.81465 | 11.3032 | 8.57404 |
| INF2 | Developing inflorescences (1-1.5 cm) | 9.27277 | 9.02607 | 9.73112 | 10.4021 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 18.0834 | 16.4897 | 13.8502 | 19.0645 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 19.2594 | 20.9438 | 21.3143 | 63.3816 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 14.1963 | 14.002 | 14.6046 | 14.1074 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 5.30369 | 5.25758 | 5.48164 | 12.7903 |
CDS Structure of MLOC_55396
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55396.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os01g58790.2 |
-2 |
0.0 |
559 |
328/406 (81%) |
13101.m15085 protein GHMP kinases ATP-binding protein, putative, expressed |
| TAIR PP10 |
AT2G26930.1 |
-2 |
3e-150 |
462 |
248/335 (74%) |
| Symbols: ATCDPMEK, PDE277, ISPE, CDPMEK | 4-(cytidine 5-phospho)-2-C-methyl-D-erithritol kinase | chr2:11491829-11494229 REVERSE LENGTH=383 |
