MLOC_55380 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.661315.323913.637516.3328
LEAShoots from the seedlings (10 cm shoot stage)9.184647.962868.567627.09987
INF1Young developing inflorescences (5mm)5.278795.22616.613665.18175
INF2Developing inflorescences (1-1.5 cm)3.121925.325394.056085.07879
ROORoots from the seedlings (10 cm shoot stage)11.134915.923813.419217.3917
NODDeveloping tillers at six leaf stage, 3rd internode1.145112.041451.289895.39568
CAR5Developing grain, bracts removed (5 DPA)23.257425.700222.648925.1692
CAR15Developing grain, bracts removed (15 DPA)5.73268.050257.3010918.9454



CDS Structure of MLOC_55380






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55380.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363428NoneNoneNoneNone
MLOC_55380.1CUST_3403_PI427708080AvailableAvailablecontig_39910 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g20360.1 -1 0.0 634 325/409 (79%) 13102.m02277 protein tyrosine aminotransferase, putative, expressed
TAIR PP10 AT5G53970.1 -1 2e-135 412 219/405 (54%) Tyrosine transaminase family protein | chr5:21910676-21912594 FORWARD LENGTH=414