- Predicted Gene MLOC_55378
MLOC_55378 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 4.18915 | 5.88985 | 5.92637 | 5.54723 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 26.6364 | 46.3057 | 34.9267 | 31.0672 |
| INF1 | Young developing inflorescences (5mm) | 5.62372 | 5.2068 | 5.08892 | 4.42497 |
| INF2 | Developing inflorescences (1-1.5 cm) | 7.31541 | 6.81242 | 7.08331 | 7.624 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 1.38539 | 4.22032 | 3.13524 | 4.61183 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 11.4903 | 11.3323 | 15.7379 | 43.0132 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 6.46092 | 7.73557 | 7.61572 | 7.11371 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 1.6157 | 2.23642 | 1.91113 | 4.26439 |
CDS Structure of MLOC_55378
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55378.6
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os01g55880.1 |
-3 |
5e-179 |
525 |
260/326 (80%) |
13101.m05897 protein hemimethylated DNA binding domain containing protein |
| TAIR PP10 |
AT2G03390.1 |
-3 |
9e-110 |
339 |
169/268 (63%) |
uvrB/uvrC motif-containing protein | chr2:1030635-1032354 REVERSE LENGTH=330 |
