MLOC_55372 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.144912.016112.003212.6334
LEAShoots from the seedlings (10 cm shoot stage)2.275211.064130.8792031.22969
INF1Young developing inflorescences (5mm)77.205482.525361.839566.9983
INF2Developing inflorescences (1-1.5 cm)53.158258.91555.720763.7534
ROORoots from the seedlings (10 cm shoot stage)9.8424910.040917.401212.6522
NODDeveloping tillers at six leaf stage, 3rd internode10.04425.105333.7544915.2348
CAR5Developing grain, bracts removed (5 DPA)56.267965.187849.296857.8791
CAR15Developing grain, bracts removed (15 DPA)5.083323.823456.5670612.2457



CDS Structure of MLOC_55372






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55372.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374876NoneNoneNoneNone
MLOC_55372.2CUST_3401_PI427708080AvailableAvailablecontig_39903 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g40010.3 +3 3e-113 337 170/177 (96%) 13102.m04448 protein phosphoribosyl transferase, putative, expressed
TAIR PP10 AT1G80050.1 +3 2e-84 261 129/177 (73%) | Symbols: APT2, ATAPT2, PHT1.1 | adenine phosphoribosyl transferase 2 | chr1:30111708-30113261 REVERSE LENGTH=192