MLOC_55371 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.895621.741223.726423.0298
LEAShoots from the seedlings (10 cm shoot stage)34.299423.122925.213223.6058
INF1Young developing inflorescences (5mm)15.768917.176317.745714.9226
INF2Developing inflorescences (1-1.5 cm)14.873815.130716.430617.4217
ROORoots from the seedlings (10 cm shoot stage)27.812629.463924.334935.6131
NODDeveloping tillers at six leaf stage, 3rd internode44.810831.853645.5185112.239
CAR5Developing grain, bracts removed (5 DPA)46.920552.286953.801652.0999
CAR15Developing grain, bracts removed (15 DPA)63.37758.969260.7423152.007



CDS Structure of MLOC_55371






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55371.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250710.1NoneNoneNoneNone
MLOC_55371.1CUST_3400_PI427708080AvailableAvailablecontig_39901 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g41100.1 -2 0.0 523 243/289 (84%) 13108.m04407 protein CHIT12 - Chitinase family protein precursor, expressed
TAIR PP10 AT1G05850.1 -2 2e-143 417 188/277 (68%) | Symbols: POM1, ERH2, ELP1, CTL1, ELP, HOT2, ATCTL1 | Chitinase family protein | chr1:1766833-1768117 REVERSE LENGTH=321