MLOC_55370 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.682034.099123.396113.40667
LEAShoots from the seedlings (10 cm shoot stage)19.840626.71927.675620.5112
INF1Young developing inflorescences (5mm)6.515385.230586.293034.79709
INF2Developing inflorescences (1-1.5 cm)3.488243.267183.322633.42941
ROORoots from the seedlings (10 cm shoot stage)0.2147440.6352230.7613460.671931
NODDeveloping tillers at six leaf stage, 3rd internode3.149613.008896.0618311.4597
CAR5Developing grain, bracts removed (5 DPA)4.974734.201524.482774.12394
CAR15Developing grain, bracts removed (15 DPA)0.7229080.6164580.7693521.46774



CDS Structure of MLOC_55370






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55370.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250718.1NoneNoneNoneNone
MLOC_55370.1CUST_3399_PI427708080AvailableAvailablecontig_39901 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g41090.1 -3 2e-157 455 254/334 (76%) 13108.m04406 protein peroxidase precursor, putative, expressed
TAIR PP10 AT4G32320.1 -3 2e-102 313 153/236 (65%) | Symbols: APX6 | ascorbate peroxidase 6 | chr4:15602777-15605234 FORWARD LENGTH=329