MLOC_55351 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.61895.843075.218024.25549
LEAShoots from the seedlings (10 cm shoot stage)4.142912.135912.822012.37868
INF1Young developing inflorescences (5mm)5.915055.940755.316754.32442
INF2Developing inflorescences (1-1.5 cm)2.343682.200832.495482.23675
ROORoots from the seedlings (10 cm shoot stage)3.130343.748452.560023.55943
NODDeveloping tillers at six leaf stage, 3rd internode1.645922.142143.0246.35232
CAR5Developing grain, bracts removed (5 DPA)3.343513.483554.150973.0606
CAR15Developing grain, bracts removed (15 DPA)1.756351.837721.545013.53113



CDS Structure of MLOC_55351






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55351.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55351.1CUST_13366_PI427708080AvailableAvailablecontig_39884 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05130.1 +3 5e-94 292 193/277 (70%) 13105.m00527 protein GA20663-PA, putative, expressed
TAIR PP10 AT5G27400.1 +3 4e-65 219 170/354 (48%) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:9676362-9678285 FORWARD LENGTH=369