MLOC_55350 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4997310.2418330.291860.332153
LEAShoots from the seedlings (10 cm shoot stage)3.295986.075898.958485.35117
INF1Young developing inflorescences (5mm)0.03412860.019879600.0261205
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.2403730.07753580.05971820.115186
NODDeveloping tillers at six leaf stage, 3rd internode2.667191.809985.600578.04612
CAR5Developing grain, bracts removed (5 DPA)1.337791.392251.532871.57827
CAR15Developing grain, bracts removed (15 DPA)0.1958520.1573510.1080630.432714



CDS Structure of MLOC_55350






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55350.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55350.1CUST_13365_PI427708080AvailableAvailablecontig_39883 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g30100.1 -1 7e-126 382 218/366 (60%) 13108.m03115 protein 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed
TAIR PP10 AT1G06620.1 -1 2e-104 325 184/364 (51%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365