MLOC_55338 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.343821.625891.487341.32932
LEAShoots from the seedlings (10 cm shoot stage)2.681083.360743.042472.14783
INF1Young developing inflorescences (5mm)0.8649030.7276420.850370.610676
INF2Developing inflorescences (1-1.5 cm)0.8112710.7837130.8044090.762286
ROORoots from the seedlings (10 cm shoot stage)2.242692.819393.439092.71981
NODDeveloping tillers at six leaf stage, 3rd internode2.87492.685393.12766.89691
CAR5Developing grain, bracts removed (5 DPA)1.452111.331651.568211.15034
CAR15Developing grain, bracts removed (15 DPA)0.5496970.6973590.585551.18973



CDS Structure of MLOC_55338






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55338.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371355NoneNoneNoneNone
MLOC_55338.1CUST_3392_PI427708080AvailableAvailablecontig_39871 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g07160.1 +3 2e-137 439 229/269 (85%) 13102.m00807 protein glyoxalase family protein, putative, expressed
TAIR PP10 AT1G06570.1 +3 7e-98 327 168/273 (62%) | Symbols: PDS1, HPD | phytoene desaturation 1 | chr1:2012015-2013543 REVERSE LENGTH=473