- Predicted Gene MLOC_55338
MLOC_55338 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 1.34382 | 1.62589 | 1.48734 | 1.32932 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.68108 | 3.36074 | 3.04247 | 2.14783 |
INF1 | Young developing inflorescences (5mm) | 0.864903 | 0.727642 | 0.85037 | 0.610676 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.811271 | 0.783713 | 0.804409 | 0.762286 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.24269 | 2.81939 | 3.43909 | 2.71981 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.8749 | 2.68539 | 3.1276 | 6.89691 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.45211 | 1.33165 | 1.56821 | 1.15034 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.549697 | 0.697359 | 0.58555 | 1.18973 |
CDS Structure of MLOC_55338
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55338.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g07160.1 |
+3 |
2e-137 |
439 |
229/269 (85%) |
13102.m00807 protein glyoxalase family protein, putative, expressed |
TAIR PP10 |
AT1G06570.1 |
+3 |
7e-98 |
327 |
168/273 (62%) |
| Symbols: PDS1, HPD | phytoene desaturation 1 | chr1:2012015-2013543 REVERSE LENGTH=473 |