MLOC_55337 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.199811.0110.204810.2704
LEAShoots from the seedlings (10 cm shoot stage)27.510344.845480.991839.7627
INF1Young developing inflorescences (5mm)6.255456.435986.101875.46211
INF2Developing inflorescences (1-1.5 cm)5.167874.469055.566245.60325
ROORoots from the seedlings (10 cm shoot stage)34.342216.370221.38420.1744
NODDeveloping tillers at six leaf stage, 3rd internode49.328973.149890.5001212.258
CAR5Developing grain, bracts removed (5 DPA)10.00211.0478.8069610.0678
CAR15Developing grain, bracts removed (15 DPA)4.861295.68893.8286612.2098



CDS Structure of MLOC_55337






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55337.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362420NoneNoneNoneNone
MLOC_55337.1CUST_3391_PI427708080AvailableAvailablecontig_39871 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g07160.1 +3 0.0 600 352/414 (85%) 13102.m00807 protein glyoxalase family protein, putative, expressed
TAIR PP10 AT1G06570.1 +3 2e-154 459 257/412 (62%) | Symbols: PDS1, HPD | phytoene desaturation 1 | chr1:2012015-2013543 REVERSE LENGTH=473