MLOC_55294 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.628921.064721.166721.3227
LEAShoots from the seedlings (10 cm shoot stage)21.2919.294368.7355710.7387
INF1Young developing inflorescences (5mm)110.115167.53147.763126.766
INF2Developing inflorescences (1-1.5 cm)57.459248.508933.725955.8217
ROORoots from the seedlings (10 cm shoot stage)16.02413.734618.588216.688
NODDeveloping tillers at six leaf stage, 3rd internode42.25139.120715.9652104.272
CAR5Developing grain, bracts removed (5 DPA)3.193934.15383.847763.92075
CAR15Developing grain, bracts removed (15 DPA)1.373961.324251.197093.34003



CDS Structure of MLOC_55294






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55294.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353583NoneNoneNoneNone
MLOC_55294.2CUST_3386_PI427708080AvailableAvailablecontig_39835 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g10460.1 +1 0.0 600 351/483 (73%) 13104.m00941 protein amidase, putative, expressed
TAIR PP10 AT4G34880.1 +1 6e-131 397 251/485 (52%) Amidase family protein | chr4:16615549-16617424 FORWARD LENGTH=466