MLOC_55265 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.1527490.1065650.2088450.143065
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode000.0249290.0461313
CAR5Developing grain, bracts removed (5 DPA)41.924640.119431.682733.7777
CAR15Developing grain, bracts removed (15 DPA)0.4159960.3732680.3809030.826419



CDS Structure of MLOC_55265






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55265.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372778NoneNoneNoneNone
MLOC_55265.2CUST_3383_PI427708080AvailableAvailablecontig_39813 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g18690.1 +3 3e-54 191 134/376 (36%) 13102.m02094 protein BURP domain containing protein, expressed
TAIR PP10 AT5G25610.1 +3 3e-18 86 52/174 (30%) | Symbols: RD22, ATRD22 | BURP domain-containing protein | chr5:8914498-8916684 REVERSE LENGTH=392