- Predicted Gene MLOC_55254
MLOC_55254 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 4.55917 | 4.90763 | 4.96578 | 5.35887 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 27.2575 | 43.9496 | 53.4899 | 36.8397 |
| INF1 | Young developing inflorescences (5mm) | 2.81306 | 2.69321 | 2.38617 | 2.62133 |
| INF2 | Developing inflorescences (1-1.5 cm) | 1.6152 | 1.34924 | 0.959321 | 1.73956 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 0.294568 | 0.578728 | 0.88534 | 0.798692 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 14.6684 | 21.1713 | 37.689 | 76.4358 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 2.44424 | 3.2368 | 3.33746 | 3.71624 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.464497 | 0.639919 | 0.782959 | 1.84342 |
CDS Structure of MLOC_55254
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55254.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 | None | - | - | - | - | - |
| TAIR PP10 |
AT3G56010.1 |
+3 |
9e-33 |
122 |
71/135 (53%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20788758-20789656 FORWARD LENGTH=201 |