MLOC_55254 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.559174.907634.965785.35887
LEAShoots from the seedlings (10 cm shoot stage)27.257543.949653.489936.8397
INF1Young developing inflorescences (5mm)2.813062.693212.386172.62133
INF2Developing inflorescences (1-1.5 cm)1.61521.349240.9593211.73956
ROORoots from the seedlings (10 cm shoot stage)0.2945680.5787280.885340.798692
NODDeveloping tillers at six leaf stage, 3rd internode14.668421.171337.68976.4358
CAR5Developing grain, bracts removed (5 DPA)2.444243.23683.337463.71624
CAR15Developing grain, bracts removed (15 DPA)0.4644970.6399190.7829591.84342



CDS Structure of MLOC_55254






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55254.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355986NoneNoneNoneNone
MLOC_55254.2CUST_3381_PI427708080AvailableAvailablecontig_39799 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10 AT3G56010.1 +3 9e-33 122 71/135 (53%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20788758-20789656 FORWARD LENGTH=201