MLOC_55253 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.619874.584654.132934.76901
LEAShoots from the seedlings (10 cm shoot stage)21.809410.067.5342611.9008
INF1Young developing inflorescences (5mm)0.5505190.6360461.031110.614432
INF2Developing inflorescences (1-1.5 cm)4.372612.72154.115834.01551
ROORoots from the seedlings (10 cm shoot stage)15.49229.638169.9209414.0313
NODDeveloping tillers at six leaf stage, 3rd internode3.69975.166443.6761417.7483
CAR5Developing grain, bracts removed (5 DPA)9.026697.70894.678417.27771
CAR15Developing grain, bracts removed (15 DPA)10.78512.335510.644426.003



CDS Structure of MLOC_55253






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55253.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55253.3CUST_13350_PI427708080AvailableAvailablecontig_39799 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18200.1 +3 0.0 808 432/534 (81%) 13103.m02180 protein heat shock protein DnaJ, putative, expressed
TAIR PP10 AT3G08970.1 +3 0.0 540 288/563 (51%) | Symbols: ATERDJ3A, TMS1 | DNAJ heat shock N-terminal domain-containing protein | chr3:2737589-2740265 FORWARD LENGTH=572