- Predicted Gene MLOC_55250
MLOC_55250 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 13.3031 | 12.7265 | 15.6985 | 13.492 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 9.54126 | 9.29825 | 10.5422 | 8.2953 |
| INF1 | Young developing inflorescences (5mm) | 8.79763 | 10.8906 | 11.4582 | 8.68403 |
| INF2 | Developing inflorescences (1-1.5 cm) | 10.4513 | 10.2319 | 9.26838 | 11.4153 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 14.5827 | 12.838 | 10.9423 | 15.8638 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 14.0718 | 13.8604 | 14.1879 | 46.179 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 8.35469 | 8.15152 | 7.92562 | 8.4208 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 3.35076 | 3.06584 | 3.53555 | 7.66021 |
CDS Structure of MLOC_55250
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55250.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g25070.1 |
+3 |
2e-166 |
481 |
245/290 (84%) |
13105.m02567 protein expressed protein |
| TAIR PP10 |
AT5G01970.1 |
+3 |
1e-87 |
276 |
154/273 (56%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). | chr5:373014-374651 REVERSE LENGTH=351 |
