MLOC_55237 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.26730400.884593
LEAShoots from the seedlings (10 cm shoot stage)0.2425310.4906330.407380.979895
INF1Young developing inflorescences (5mm)0.3993170.6739861.148251.0024
INF2Developing inflorescences (1-1.5 cm)00.1970550.1457140.696282
ROORoots from the seedlings (10 cm shoot stage)0.252468000.395069
NODDeveloping tillers at six leaf stage, 3rd internode00.1669750.2360651.32776
CAR5Developing grain, bracts removed (5 DPA)0.271200.1499030.98728
CAR15Developing grain, bracts removed (15 DPA)0.143551000.404935



CDS Structure of MLOC_55237






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55237.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55237.1CUST_7695_PI427708083AvailableAvailablecontig_397744 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g31460.1 -1 7e-40 144 69/104 (66%) 13108.m03262 protein GTPase of unknown function domain containing protein, putative, expressed
TAIR PP10 AT1G78010.1 -1 8e-26 94 47/87 (54%) tRNA modification GTPase, putative | chr1:29333535-29336297 FORWARD LENGTH=560