MLOC_55199 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2376950.4580.3405560.454762
LEAShoots from the seedlings (10 cm shoot stage)55.9988115.837119.66497.1311
INF1Young developing inflorescences (5mm)0.6155390.8533080.4813820.636404
INF2Developing inflorescences (1-1.5 cm)0.5518070.5552330.7583550.743033
ROORoots from the seedlings (10 cm shoot stage)0.358880.0627510.927230.276722
NODDeveloping tillers at six leaf stage, 3rd internode40.051947.878669.998191.072
CAR5Developing grain, bracts removed (5 DPA)18.982124.010222.10424.7723
CAR15Developing grain, bracts removed (15 DPA)29.367826.002624.579670.2667



CDS Structure of MLOC_55199






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55199.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356057NoneNoneNoneNone
MLOC_55199.2CUST_3373_PI427708080AvailableAvailablecontig_39745 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g34810.1 +2 0.0 642 329/395 (83%) 13102.m03772 protein OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed
TAIR PP10 AT1G77490.1 +2 0.0 550 271/377 (72%) | Symbols: TAPX | thylakoidal ascorbate peroxidase | chr1:29117688-29120046 FORWARD LENGTH=426