MLOC_55190 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.926942.791972.74532.76933
LEAShoots from the seedlings (10 cm shoot stage)2.624953.224964.14552.63671
INF1Young developing inflorescences (5mm)0.3423430.3140180.3099590.288352
INF2Developing inflorescences (1-1.5 cm)0.02498440.1470060.06126970.103191
ROORoots from the seedlings (10 cm shoot stage)6.567636.221933.922696.48296
NODDeveloping tillers at six leaf stage, 3rd internode0.02087530.2213920.6161360.845872
CAR5Developing grain, bracts removed (5 DPA)2.863333.00132.745032.96982
CAR15Developing grain, bracts removed (15 DPA)1.172770.754481.313352.5661



CDS Structure of MLOC_55190






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55190.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372035NoneNoneNoneNone
MLOC_55190.1CUST_287_PI427708083AvailableAvailablecontig_39739 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g74490.1 +2 3e-31 122 60/73 (82%) 13101.m08141 protein heavy metal-associated domain containing protein, expressed
TAIR PP10 AT2G28660.1 +2 7e-23 99 43/63 (68%) Chloroplast-targeted copper chaperone protein | chr2:12295419-12296944 FORWARD LENGTH=265