MLOC_55157 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.692641.372151.936321.71677
LEAShoots from the seedlings (10 cm shoot stage)1.024270.2455690.2594670.394979
INF1Young developing inflorescences (5mm)4.156636.287455.379364.73761
INF2Developing inflorescences (1-1.5 cm)6.084596.9266.67077.46523
ROORoots from the seedlings (10 cm shoot stage)1.227681.055051.166581.06188
NODDeveloping tillers at six leaf stage, 3rd internode0.03989010.04427940.0827080.124487
CAR5Developing grain, bracts removed (5 DPA)10.997911.375313.895711.9592
CAR15Developing grain, bracts removed (15 DPA)1.768311.441161.372733.92084



CDS Structure of MLOC_55157






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55157.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356702NoneNoneNoneNone
MLOC_55157.1CUST_3367_PI427708080AvailableAvailablecontig_39707 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g42100.1 -3 2e-147 446 234/298 (79%) 13104.m04145 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT2G24800.1 -3 9e-101 317 160/295 (54%) Peroxidase superfamily protein | chr2:10571255-10572570 REVERSE LENGTH=329