- Predicted Gene MLOC_55135
MLOC_55135 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 22.2894 | 17.416 | 16.6055 | 15.8537 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 20.8124 | 28.5966 | 43.299 | 20.7337 |
| INF1 | Young developing inflorescences (5mm) | 13.4912 | 19.1504 | 19.5155 | 13.4926 |
| INF2 | Developing inflorescences (1-1.5 cm) | 21.7861 | 21.821 | 21.3582 | 22.2695 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 41.9659 | 28.1264 | 22.5113 | 27.199 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 21.1117 | 41.5284 | 45.8615 | 104.572 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 21.3795 | 22.9819 | 21.7033 | 19.6976 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 32.8316 | 33.4287 | 30.9744 | 76.344 |
CDS Structure of MLOC_55135
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55135.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os08g32980.1 |
-3 |
4e-77 |
243 |
171/227 (75%) |
13108.m03428 protein expressed protein |
| TAIR PP10 |
AT5G16550.1 |
-3 |
4e-35 |
132 |
80/155 (52%) |
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5405526-5406641 FORWARD LENGTH=249 |