MLOC_55135 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.289417.41616.605515.8537
LEAShoots from the seedlings (10 cm shoot stage)20.812428.596643.29920.7337
INF1Young developing inflorescences (5mm)13.491219.150419.515513.4926
INF2Developing inflorescences (1-1.5 cm)21.786121.82121.358222.2695
ROORoots from the seedlings (10 cm shoot stage)41.965928.126422.511327.199
NODDeveloping tillers at six leaf stage, 3rd internode21.111741.528445.8615104.572
CAR5Developing grain, bracts removed (5 DPA)21.379522.981921.703319.6976
CAR15Developing grain, bracts removed (15 DPA)32.831633.428730.974476.344



CDS Structure of MLOC_55135






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55135.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366929NoneNoneNoneNone
MLOC_55135.1CUST_3359_PI427708080AvailableAvailablecontig_39687 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g32980.1 -3 4e-77 243 171/227 (75%) 13108.m03428 protein expressed protein
TAIR PP10 AT5G16550.1 -3 4e-35 132 80/155 (52%) unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5405526-5406641 FORWARD LENGTH=249