MLOC_55125 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.804873.416162.954662.22195
LEAShoots from the seedlings (10 cm shoot stage)9.036032.626015.084623.57187
INF1Young developing inflorescences (5mm)3.643033.767633.793512.12439
INF2Developing inflorescences (1-1.5 cm)4.160754.766065.206553.00056
ROORoots from the seedlings (10 cm shoot stage)4.842592.821342.968151.86243
NODDeveloping tillers at six leaf stage, 3rd internode5.298875.1551115.569810.7831
CAR5Developing grain, bracts removed (5 DPA)8.259446.853636.107953.91633
CAR15Developing grain, bracts removed (15 DPA)0.7479750.4649720.5103761.10158



CDS Structure of MLOC_55125






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55125.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55125.1CUST_13328_PI427708080AvailableAvailablecontig_39681 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g56220.1 +3 0.0 696 386/447 (86%) 13103.m06127 protein stress-induced protein, putative, expressed
TAIR PP10 AT1G10020.1 +3 9e-142 429 252/471 (54%) Protein of unknown function (DUF1005) | chr1:3269939-3271732 REVERSE LENGTH=461