MLOC_55124 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains690.682421.737447.943480.529
LEAShoots from the seedlings (10 cm shoot stage)231.323146.958176.027149.319
INF1Young developing inflorescences (5mm)669.351713.194826.02605.945
INF2Developing inflorescences (1-1.5 cm)539.086509.875572.422576.504
ROORoots from the seedlings (10 cm shoot stage)421.548361.881490.524430.99
NODDeveloping tillers at six leaf stage, 3rd internode131.5382.1153110.219254.4
CAR5Developing grain, bracts removed (5 DPA)230.78278.593254.296250.537
CAR15Developing grain, bracts removed (15 DPA)47.485143.129752.8537110.379



CDS Structure of MLOC_55124






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55124.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252951.1NoneNoneNoneNone
MLOC_55124.1CUST_3357_PI427708080AvailableAvailablecontig_39681 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g41610.1 +3 2e-37 128 55/56 (98%) 13111.m04131 protein 40S ribosomal protein S29, putative
TAIR PP10 AT4G33865.1 +3 2e-35 122 52/56 (93%) Ribosomal protein S14p/S29e family protein | chr4:16233395-16234114 REVERSE LENGTH=56