MLOC_55123 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.518834.711815.063925.44784
LEAShoots from the seedlings (10 cm shoot stage)1.147171.149261.04830.951435
INF1Young developing inflorescences (5mm)0.2276580.2709980.1177770.208663
INF2Developing inflorescences (1-1.5 cm)0.483470.6782370.3957630.704412
ROORoots from the seedlings (10 cm shoot stage)19.817715.394122.236120.0886
NODDeveloping tillers at six leaf stage, 3rd internode0.6147890.3809681.17711.61896
CAR5Developing grain, bracts removed (5 DPA)1.039910.8260340.6862750.958658
CAR15Developing grain, bracts removed (15 DPA)1.203441.61150.8268343.61685



CDS Structure of MLOC_55123






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55123.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365108NoneNoneNoneNone
MLOC_55123.1CUST_18117_PI427708080AvailableAvailablecontig_39680 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g70930.1 -2 2e-173 499 264/353 (75%) 13101.m07719 protein leucoanthocyanidin dioxygenase, putative, expressed
TAIR PP10 AT3G21420.1 -2 9e-137 405 210/356 (59%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:7541579-7543221 FORWARD LENGTH=364