- Predicted Gene MLOC_55110
MLOC_55110 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_55110_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 4.47949 | 4.18607 | 4.43604 | 3.77443 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 3.57596 | 2.91216 | 4.18244 | 2.66494 |
INF1 | Young developing inflorescences (5mm) | 2.6808 | 3.49478 | 4.78792 | 2.5025 |
INF2 | Developing inflorescences (1-1.5 cm) | 2.95615 | 2.61593 | 3.70259 | 2.77821 |
ROO | Roots from the seedlings (10 cm shoot stage) | 5.76828 | 4.94347 | 3.27391 | 5.05952 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.57811 | 3.14696 | 5.71796 | 9.57292 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.7973 | 1.91685 | 3.35383 | 1.82163 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.32241 | 1.54586 | 1.30662 | 2.67036 |
CDS Structure of MLOC_55110
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55110.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g03950.3 |
+3 |
4e-140 |
417 |
229/272 (84%) |
13102.m00393 protein zinc finger, C3HC4 type family protein, expressed |
TAIR PP10 |
AT1G50440.3 |
+3 |
8e-93 |
293 |
173/256 (68%) |
RING/FYVE/PHD zinc finger superfamily protein | chr1:18686099-18687646 FORWARD LENGTH=250 |