MLOC_55110 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.479494.186074.436043.77443
LEAShoots from the seedlings (10 cm shoot stage)3.575962.912164.182442.66494
INF1Young developing inflorescences (5mm)2.68083.494784.787922.5025
INF2Developing inflorescences (1-1.5 cm)2.956152.615933.702592.77821
ROORoots from the seedlings (10 cm shoot stage)5.768284.943473.273915.05952
NODDeveloping tillers at six leaf stage, 3rd internode2.578113.146965.717969.57292
CAR5Developing grain, bracts removed (5 DPA)1.79731.916853.353831.82163
CAR15Developing grain, bracts removed (15 DPA)1.322411.545861.306622.67036



CDS Structure of MLOC_55110






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55110.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55110.2CUST_17746_PI427708080AvailableAvailablecontig_39668 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g03950.3 +3 4e-140 417 229/272 (84%) 13102.m00393 protein zinc finger, C3HC4 type family protein, expressed
TAIR PP10 AT1G50440.3 +3 8e-93 293 173/256 (68%) RING/FYVE/PHD zinc finger superfamily protein | chr1:18686099-18687646 FORWARD LENGTH=250