MLOC_5511 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.273155.512935.759976.55321
LEAShoots from the seedlings (10 cm shoot stage)1.95180.3236990.3057770.781773
INF1Young developing inflorescences (5mm)17.368615.537412.927614.2143
INF2Developing inflorescences (1-1.5 cm)11.834613.377712.015115.4482
ROORoots from the seedlings (10 cm shoot stage)1.684273.755493.09944.9669
NODDeveloping tillers at six leaf stage, 3rd internode0.1154210.1760760.04669030.610761
CAR5Developing grain, bracts removed (5 DPA)4.715844.476334.032234.94737
CAR15Developing grain, bracts removed (15 DPA)0.5672650.4529260.4014641.25328



CDS Structure of MLOC_5511






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5511.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5511.1CUST_13324_PI427708080AvailableAvailablecontig_136341 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g05560.1 +3 0.0 648 374/593 (63%) 13108.m00545 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT4G01270.1 +3 6e-60 212 123/288 (43%) RING/U-box superfamily protein | chr4:532351-534891 FORWARD LENGTH=506