MLOC_55102 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1433580.3601960.2195010.284432
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)1.183560.7149120.3783140.944912
NODDeveloping tillers at six leaf stage, 3rd internode0.2733360.191710.3265120.703262
CAR5Developing grain, bracts removed (5 DPA)0.0292089000.0261347
CAR15Developing grain, bracts removed (15 DPA)0.5662120.532170.6737521.37558



CDS Structure of MLOC_55102






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55102.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55102.5CUST_13322_PI427708080AvailableAvailablecontig_39657 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g66850.1 -2 6e-180 518 248/374 (66%) 13101.m42769 protein pectinacetylesterase domain containing protein, expressed
TAIR PP10 AT3G09410.1 -2 2e-133 399 183/363 (50%) Pectinacetylesterase family protein | chr3:2898243-2900984 REVERSE LENGTH=427