MLOC_55057 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains28.187630.37228.452133.4821
LEAShoots from the seedlings (10 cm shoot stage)18.182218.288617.243416.6742
INF1Young developing inflorescences (5mm)33.873230.538726.49827.3332
INF2Developing inflorescences (1-1.5 cm)22.594123.685922.977126.8464
ROORoots from the seedlings (10 cm shoot stage)13.919625.06523.1532.6013
NODDeveloping tillers at six leaf stage, 3rd internode3.477433.224544.7569412.2312
CAR5Developing grain, bracts removed (5 DPA)30.308131.392129.99732.2742
CAR15Developing grain, bracts removed (15 DPA)14.214613.791512.619133.6098



CDS Structure of MLOC_55057






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55057.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251720.1NoneNoneNoneNone
MLOC_55057.1CUST_3347_PI427708080AvailableAvailablecontig_39611 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g37837.1 +1 0.0 759 389/452 (86%) 13101.m03853 protein seryl-tRNA synthetase, putative, expressed
TAIR PP10 AT5G27470.1 +1 0.0 644 321/464 (69%) seryl-tRNA synthetase / serine--tRNA ligase | chr5:9695087-9697154 FORWARD LENGTH=451