MLOC_55054 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1801050.06188030.1696110.121299
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)000.03182450.0240072
INF2Developing inflorescences (1-1.5 cm)0.0252518000.0313339
ROORoots from the seedlings (10 cm shoot stage)0.6566780.037169800.199391
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)7.105837.570027.814617.03327
CAR15Developing grain, bracts removed (15 DPA)8.67717.531569.2889120.1298



CDS Structure of MLOC_55054






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55054.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55054.1CUST_13314_PI427708080AvailableAvailablecontig_39609 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g36180.1 -2 0.0 707 341/458 (74%) 13106.m03737 protein amino acid transporter, putative, expressed
TAIR PP10 AT5G49630.1 -2 0.0 583 283/455 (62%) | Symbols: AAP6 | amino acid permease 6 | chr5:20142681-20146441 REVERSE LENGTH=481