MLOC_55034 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.495967.548435.752044.71581
LEAShoots from the seedlings (10 cm shoot stage)8.909287.353485.689325.8775
INF1Young developing inflorescences (5mm)18.042916.295315.435812.2746
INF2Developing inflorescences (1-1.5 cm)21.857721.564918.660420.6248
ROORoots from the seedlings (10 cm shoot stage)2.380166.145794.309255.78731
NODDeveloping tillers at six leaf stage, 3rd internode2.186163.986993.7153612.6539
CAR5Developing grain, bracts removed (5 DPA)8.678557.755539.946087.4372
CAR15Developing grain, bracts removed (15 DPA)4.384863.452443.652287.63901



CDS Structure of MLOC_55034






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55034.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55034.1CUST_13310_PI427708080AvailableAvailablecontig_39595 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g52794.1 +1 0.0 4992 2699/3390 (80%) 13103.m05758 protein phosphatidylinositol kinase, putative, expressed
TAIR PP10 AT1G50030.2 +1 8e-67 253 180/609 (30%) | Symbols: TOR | target of rapamycin | chr1:18522626-18539619 REVERSE LENGTH=2454