- Predicted Gene MLOC_55029
MLOC_55029 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 197.94 | 265.33 | 257.724 | 267.853 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 39.8547 | 25.1103 | 25.9512 | 26.3264 |
| INF1 | Young developing inflorescences (5mm) | 63.2171 | 64.7643 | 70.6628 | 62.1161 |
| INF2 | Developing inflorescences (1-1.5 cm) | 42.5417 | 47.6947 | 55.5918 | 57.3052 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 151.716 | 156.18 | 119.708 | 191.491 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 65.2829 | 60.1408 | 19.0175 | 158.279 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 116.351 | 104.537 | 110.075 | 118.214 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 4.42773 | 4.18007 | 5.20726 | 11.7125 |
CDS Structure of MLOC_55029
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55029.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g49380.1 |
+1 |
0.0 |
1419 |
697/884 (79%) |
13103.m05343 protein lipoxygenase, putative, expressed |
| TAIR PP10 |
AT1G55020.1 |
+1 |
0.0 |
1015 |
515/878 (59%) |
| Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859 |
