MLOC_55027 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains38.972936.416138.604738.3991
LEAShoots from the seedlings (10 cm shoot stage)31.010423.591225.92121.7399
INF1Young developing inflorescences (5mm)6.716696.52245.882125.8598
INF2Developing inflorescences (1-1.5 cm)1.072251.013672.002871.4924
ROORoots from the seedlings (10 cm shoot stage)68.785464.674446.002671.1836
NODDeveloping tillers at six leaf stage, 3rd internode93.6561108.402189.791340.964
CAR5Developing grain, bracts removed (5 DPA)6.492895.693845.429146.08952
CAR15Developing grain, bracts removed (15 DPA)1.745081.476741.212323.89655



CDS Structure of MLOC_55027






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55027.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356005NoneNoneNoneNone
MLOC_55027.2CUST_18114_PI427708080AvailableAvailablecontig_39586 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g08100.1 -1 0.0 852 470/531 (89%) 13102.m00932 protein AMP-binding domain containing protein, expressed
TAIR PP10 AT1G51680.1 -1 0.0 635 347/537 (65%) | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA ligase 1 | chr1:19159007-19161464 REVERSE LENGTH=561