MLOC_55025 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.883532.178331.874531.716
LEAShoots from the seedlings (10 cm shoot stage)24.804317.690217.188417.7708
INF1Young developing inflorescences (5mm)16.065115.830715.781614.0586
INF2Developing inflorescences (1-1.5 cm)12.543415.390413.367416.053
ROORoots from the seedlings (10 cm shoot stage)21.930626.479722.608233.2711
NODDeveloping tillers at six leaf stage, 3rd internode32.244932.868130.4757110.066
CAR5Developing grain, bracts removed (5 DPA)18.50516.876118.772418.2775
CAR15Developing grain, bracts removed (15 DPA)2.417182.567562.443446.03698



CDS Structure of MLOC_55025






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55025.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251206.1NoneNoneNoneNone
MLOC_55025.1CUST_18113_PI427708080AvailableAvailablecontig_39586 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g12880.1 +3 0.0 940 533/728 (73%) 13101.m01407 protein VHS and GAT domain containing protein, expressed
TAIR PP10 AT4G32760.1 +3 2e-147 457 322/736 (44%) ENTH/VHS/GAT family protein | chr4:15799376-15803832 FORWARD LENGTH=675