MLOC_55024 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.830715.590515.637214.4545
LEAShoots from the seedlings (10 cm shoot stage)10.50357.275628.365247.53822
INF1Young developing inflorescences (5mm)44.549640.210336.093331.404
INF2Developing inflorescences (1-1.5 cm)34.923334.978831.778234.8698
ROORoots from the seedlings (10 cm shoot stage)7.4448214.509114.234515.7055
NODDeveloping tillers at six leaf stage, 3rd internode0.6847831.135773.794835.32457
CAR5Developing grain, bracts removed (5 DPA)21.402319.593122.363819.0727
CAR15Developing grain, bracts removed (15 DPA)4.740324.37744.211279.28342



CDS Structure of MLOC_55024






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55024.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55024.2CUST_7676_PI427708083AvailableAvailablecontig_39584 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g05720.1 +1 6e-164 495 312/359 (87%) 13103.m00617 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT3G21540.1 +1 1e-133 416 247/371 (67%) transducin family protein / WD-40 repeat family protein | chr3:7586100-7590856 REVERSE LENGTH=955