MLOC_5502 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.5570511.760810.28238.74463
LEAShoots from the seedlings (10 cm shoot stage)13.534711.83819.92159.71724
INF1Young developing inflorescences (5mm)27.769926.428229.804421.1397
INF2Developing inflorescences (1-1.5 cm)32.457831.379629.754831.8615
ROORoots from the seedlings (10 cm shoot stage)2.849467.338835.624267.34061
NODDeveloping tillers at six leaf stage, 3rd internode5.83617.980046.4228625.0148
CAR5Developing grain, bracts removed (5 DPA)16.993215.185416.799714.5461
CAR15Developing grain, bracts removed (15 DPA)9.27689.23918.7314518.8745



CDS Structure of MLOC_5502






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5502.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5502.2CUST_13307_PI427708080AvailableAvailablecontig_136334 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g46690.1 -2 0.0 1711 965/1592 (61%) 13107.m04933 protein PHD-finger family protein, expressed
TAIR PP10 AT5G12400.1 -2 0.0 659 437/1273 (34%) DNA binding;zinc ion binding;DNA binding | chr5:4013813-4021018 FORWARD LENGTH=1602