MLOC_55015 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.91133.412833.863133.79193
LEAShoots from the seedlings (10 cm shoot stage)0.1074510.2153170.6042490.265061
INF1Young developing inflorescences (5mm)0.1228990.1681510.1569940.143488
INF2Developing inflorescences (1-1.5 cm)0.057870.1660640.09144810.144227
ROORoots from the seedlings (10 cm shoot stage)6.640224.737642.639325.44898
NODDeveloping tillers at six leaf stage, 3rd internode0.3317290.3204010.1360590.759272
CAR5Developing grain, bracts removed (5 DPA)18.474725.327722.616124.5963
CAR15Developing grain, bracts removed (15 DPA)2.575222.56153.816547.75923



CDS Structure of MLOC_55015






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55015.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55015.1CUST_13306_PI427708080AvailableAvailablecontig_39573 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g48460.1 -1 0.0 541 280/384 (73%) 13107.m05189 protein stress responsive protein, putative, expressed
TAIR PP10 AT2G39050.1 -1 6e-56 194 91/150 (61%) hydroxyproline-rich glycoprotein family protein | chr2:16303427-16305336 FORWARD LENGTH=317