- Predicted Gene MLOC_55015
MLOC_55015 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 3.9113 | 3.41283 | 3.86313 | 3.79193 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.107451 | 0.215317 | 0.604249 | 0.265061 |
INF1 | Young developing inflorescences (5mm) | 0.122899 | 0.168151 | 0.156994 | 0.143488 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.05787 | 0.166064 | 0.0914481 | 0.144227 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.64022 | 4.73764 | 2.63932 | 5.44898 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.331729 | 0.320401 | 0.136059 | 0.759272 |
CAR5 | Developing grain, bracts removed (5 DPA) | 18.4747 | 25.3277 | 22.6161 | 24.5963 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.57522 | 2.5615 | 3.81654 | 7.75923 |
CDS Structure of MLOC_55015
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55015.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g48460.1 |
-1 |
0.0 |
541 |
280/384 (73%) |
13107.m05189 protein stress responsive protein, putative, expressed |
TAIR PP10 |
AT2G39050.1 |
-1 |
6e-56 |
194 |
91/150 (61%) |
hydroxyproline-rich glycoprotein family protein | chr2:16303427-16305336 FORWARD LENGTH=317 |