MLOC_55007 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.127419.368717.200518.0735
LEAShoots from the seedlings (10 cm shoot stage)16.697811.809812.748612.5201
INF1Young developing inflorescences (5mm)15.788315.708414.900413.2755
INF2Developing inflorescences (1-1.5 cm)16.522517.63416.307418.9911
ROORoots from the seedlings (10 cm shoot stage)10.253117.610811.380820.9492
NODDeveloping tillers at six leaf stage, 3rd internode13.531516.289412.332854.5802
CAR5Developing grain, bracts removed (5 DPA)29.383328.003128.521828.4374
CAR15Developing grain, bracts removed (15 DPA)12.462911.61829.3233726.6666



CDS Structure of MLOC_55007






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55007.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355207NoneNoneNoneNone
MLOC_55007.1CUST_18111_PI427708080AvailableAvailablecontig_39563 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g61050.1 -3 0.0 1427 697/822 (85%) 13103.m06708 protein FG-GAP repeat-containing protein, putative, expressed
TAIR PP10 AT3G09090.1 -3 0.0 1132 564/868 (65%) | Symbols: DEX1 | defective in exine formation protein (DEX1) | chr3:2782912-2787552 REVERSE LENGTH=896