MLOC_55003 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains38.724257.330659.164859.9437
LEAShoots from the seedlings (10 cm shoot stage)61.968117.054418.70530.1344
INF1Young developing inflorescences (5mm)40.459237.048339.606635.2912
INF2Developing inflorescences (1-1.5 cm)50.641458.094752.498465.8744
ROORoots from the seedlings (10 cm shoot stage)30.787747.660634.463663.3061
NODDeveloping tillers at six leaf stage, 3rd internode406.783490.28307.4231754.08
CAR5Developing grain, bracts removed (5 DPA)38.637335.677539.103441.2321
CAR15Developing grain, bracts removed (15 DPA)5.117934.635225.1953512.3978



CDS Structure of MLOC_55003






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55003.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370573NoneNoneNoneNone
MLOC_55003.1CUST_3340_PI427708080AvailableAvailablecontig_39559 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g56740.1 +3 0.0 929 580/915 (63%) 13104.m05916 protein IQ calmodulin-binding motif family protein, putative, expressed
TAIR PP10 AT1G19870.1 +3 2e-62 229 251/866 (29%) | Symbols: iqd32 | IQ-domain 32 | chr1:6895400-6898539 REVERSE LENGTH=794