MLOC_54998 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.057315.512517.082318.1482
LEAShoots from the seedlings (10 cm shoot stage)24.890825.605531.66623.034
INF1Young developing inflorescences (5mm)16.909417.790316.748814.9998
INF2Developing inflorescences (1-1.5 cm)16.554817.290516.353519.3984
ROORoots from the seedlings (10 cm shoot stage)23.279922.565323.798326.8954
NODDeveloping tillers at six leaf stage, 3rd internode14.604318.079122.79661.0217
CAR5Developing grain, bracts removed (5 DPA)18.079418.123718.777219.3323
CAR15Developing grain, bracts removed (15 DPA)8.979088.326356.5807820.1926



CDS Structure of MLOC_54998






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54998.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364493NoneNoneNoneNone
MLOC_54998.1CUST_3338_PI427708080AvailableAvailablecontig_39557 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g50050.1 -1 0.0 651 343/383 (90%) 13106.m05375 protein AAA-type ATPase family protein, putative
TAIR PP10 AT4G27680.1 -1 0.0 541 279/372 (75%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:13821263-13823083 FORWARD LENGTH=398