MLOC_54991 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.26711.893512.148811.5826
LEAShoots from the seedlings (10 cm shoot stage)1.77120.375280.7147450.763939
INF1Young developing inflorescences (5mm)0.0517690.03045880.03310970.033385
INF2Developing inflorescences (1-1.5 cm)0.026231000.0327518
ROORoots from the seedlings (10 cm shoot stage)43.636924.483720.151728.1043
NODDeveloping tillers at six leaf stage, 3rd internode12.322618.13820.88560137.3933
CAR5Developing grain, bracts removed (5 DPA)0.1594030.150840.06344120.128226
CAR15Developing grain, bracts removed (15 DPA)0.02453820.028713100.0850454



CDS Structure of MLOC_54991






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54991.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368850NoneNoneNoneNone
MLOC_54991.2CUST_3336_PI427708080AvailableAvailablecontig_39554 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g07350.1 +1 2e-173 500 282/360 (78%) 13109.m00581 protein fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
TAIR PP10 AT4G12730.1 +1 5e-96 301 175/327 (54%) | Symbols: FLA2 | FASCICLIN-like arabinogalactan 2 | chr4:7491598-7492809 REVERSE LENGTH=403