MLOC_54986 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2077240.5187110.1477730.311717
LEAShoots from the seedlings (10 cm shoot stage)0.176340.8833090.3542740.340844
INF1Young developing inflorescences (5mm)0.8393960.6321960.7936180.550372
INF2Developing inflorescences (1-1.5 cm)0.9538850.8812270.9581310.895275
ROORoots from the seedlings (10 cm shoot stage)0.08859680.3486880.5069030.354406
NODDeveloping tillers at six leaf stage, 3rd internode0.09073610.2502720.2663090.802624
CAR5Developing grain, bracts removed (5 DPA)0.5168370.675050.6913780.533236
CAR15Developing grain, bracts removed (15 DPA)0.3212260.1085180.2364770.494581



CDS Structure of MLOC_54986






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54986.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54986.1CUST_13301_PI427708080AvailableAvailablecontig_39553 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g37170.1 +1 2e-48 181 91/235 (39%) 13110.m03370 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT3G09510.1 +1 2e-13 72 57/210 (27%) Ribonuclease H-like superfamily protein | chr3:2921804-2923258 FORWARD LENGTH=484