- Predicted Gene MLOC_54986
MLOC_54986 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54986_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54986_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 0.207724 | 0.518711 | 0.147773 | 0.311717 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.17634 | 0.883309 | 0.354274 | 0.340844 |
INF1 | Young developing inflorescences (5mm) | 0.839396 | 0.632196 | 0.793618 | 0.550372 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.953885 | 0.881227 | 0.958131 | 0.895275 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.0885968 | 0.348688 | 0.506903 | 0.354406 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0907361 | 0.250272 | 0.266309 | 0.802624 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.516837 | 0.67505 | 0.691378 | 0.533236 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.321226 | 0.108518 | 0.236477 | 0.494581 |
CDS Structure of MLOC_54986
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54986.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os10g37170.1 |
+1 |
2e-48 |
181 |
91/235 (39%) |
13110.m03370 protein retrotransposon protein, putative, unclassified |
TAIR PP10 |
AT3G09510.1 |
+1 |
2e-13 |
72 |
57/210 (27%) |
Ribonuclease H-like superfamily protein | chr3:2921804-2923258 FORWARD LENGTH=484 |