MLOC_54983 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1580490.6483320.5686760.493917
LEAShoots from the seedlings (10 cm shoot stage)1.066691.767070.9895181.09995
INF1Young developing inflorescences (5mm)0.6003230.6579380.7521870.537458
INF2Developing inflorescences (1-1.5 cm)0.740170.5810210.8198090.733023
ROORoots from the seedlings (10 cm shoot stage)0.3332820.669670.3924940.75863
NODDeveloping tillers at six leaf stage, 3rd internode0.6867340.8038680.6797982.8671
CAR5Developing grain, bracts removed (5 DPA)0.5556220.5309470.6550170.544702
CAR15Developing grain, bracts removed (15 DPA)0.5250970.5429770.3695791.07559



CDS Structure of MLOC_54983






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54983.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357692NoneNoneNoneNone
MLOC_54983.5CUST_3335_PI427708080AvailableAvailablecontig_39552 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g53990.1 +1 0.0 1209 672/987 (68%) 13103.m05914 protein expressed protein
TAIR PP10 AT5G55540.1 +1 0.0 1206 695/1382 (50%) | Symbols: TRN1, LOP1 | tornado 1 | chr5:22496322-22500543 REVERSE LENGTH=1380