MLOC_54981 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3114990.4553120.2542320.37565
LEAShoots from the seedlings (10 cm shoot stage)0.1512760.1588950.132130.129276
INF1Young developing inflorescences (5mm)0.7840390.5963480.7766560.604598
INF2Developing inflorescences (1-1.5 cm)3.578433.174033.296063.60906
ROORoots from the seedlings (10 cm shoot stage)0.2170550.5271070.4619180.595741
NODDeveloping tillers at six leaf stage, 3rd internode0.09725980.1077160.03240590.34833
CAR5Developing grain, bracts removed (5 DPA)11.724412.100911.343911.2755
CAR15Developing grain, bracts removed (15 DPA)3.693483.149263.967778.06285



CDS Structure of MLOC_54981






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54981.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374431NoneNoneNoneNone
MLOC_54981.5CUST_3334_PI427708080AvailableAvailablecontig_39549 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g09384.1 +2 1e-148 444 236/431 (55%) 13101.m00998 protein ankyrin repeat domain containing protein, putative, expressed
TAIR PP10 AT3G04710.1 +2 1e-80 264 165/440 (38%) | Symbols: TPR10 | ankyrin repeat family protein | chr3:1278229-1280942 FORWARD LENGTH=456