MLOC_54980 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains49.427958.486961.751149.604
LEAShoots from the seedlings (10 cm shoot stage)44.021425.973329.283125.2175
INF1Young developing inflorescences (5mm)62.811964.022862.496547.5572
INF2Developing inflorescences (1-1.5 cm)50.073963.154761.20654.6951
ROORoots from the seedlings (10 cm shoot stage)40.876543.566540.418142.474
NODDeveloping tillers at six leaf stage, 3rd internode29.436831.39326.302182.8594
CAR5Developing grain, bracts removed (5 DPA)104.54997.1928102.04882.9151
CAR15Developing grain, bracts removed (15 DPA)34.75329.366931.591965.6934



CDS Structure of MLOC_54980






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54980.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356575NoneNoneNoneNone
MLOC_54980.1CUST_3333_PI427708080AvailableAvailablecontig_39549 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g57890.1 +1 0.0 1241 673/702 (96%) 13104.m06074 protein oligosaccharyl transferase, putative, expressed
TAIR PP10 AT1G34130.1 +1 0.0 1155 596/702 (85%) | Symbols: STT3B | staurosporin and temperature sensitive 3-like b | chr1:12430000-12432985 FORWARD LENGTH=735