MLOC_5498 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.067217.846526.573175.34493
LEAShoots from the seedlings (10 cm shoot stage)8.713496.794697.668545.29066
INF1Young developing inflorescences (5mm)8.304688.2037810.46915.37444
INF2Developing inflorescences (1-1.5 cm)7.687887.559326.1476.01042
ROORoots from the seedlings (10 cm shoot stage)2.253764.041734.296233.21605
NODDeveloping tillers at six leaf stage, 3rd internode11.36059.6395610.65426.4837
CAR5Developing grain, bracts removed (5 DPA)9.444788.733429.886176.23974
CAR15Developing grain, bracts removed (15 DPA)1.032640.6932530.8059391.45361



CDS Structure of MLOC_5498






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5498.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5498.1CUST_12776_PI427708083AvailableAvailablecontig_136333 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g06280.3 +2 1e-23 101 52/61 (85%) 13105.m00669 protein ATKINESIN-13A/KINESIN-13A, putative, expressed
TAIR PP10 AT4G15885.1 +2 1e-21 91 45/61 (74%) kinesin motor protein-related | chr4:9016451-9016978 REVERSE LENGTH=113