MLOC_54979 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.457217.754118.315615.2359
LEAShoots from the seedlings (10 cm shoot stage)14.290512.231612.72619.55593
INF1Young developing inflorescences (5mm)14.522715.284415.331810.8097
INF2Developing inflorescences (1-1.5 cm)14.956213.568314.782113.6756
ROORoots from the seedlings (10 cm shoot stage)17.553817.682318.095917.0678
NODDeveloping tillers at six leaf stage, 3rd internode13.996812.700413.111535.773
CAR5Developing grain, bracts removed (5 DPA)15.767917.11417.550713.6871
CAR15Developing grain, bracts removed (15 DPA)6.285635.488615.4620711.6395



CDS Structure of MLOC_54979






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54979.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371708NoneNoneNoneNone
MLOC_54979.1CUST_3332_PI427708080AvailableAvailablecontig_39548 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g49960.1 -2 0.0 745 365/415 (88%) 13104.m05109 protein glycosyl transferase, group 1 domain containing protein, expressed
TAIR PP10 AT1G78800.1 -2 0.0 592 282/392 (72%) UDP-Glycosyltransferase superfamily protein | chr1:29625859-29627941 REVERSE LENGTH=403