MLOC_54978 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.563011.269531.100581.24337
LEAShoots from the seedlings (10 cm shoot stage)0.3632250.4536310.5520880.343768
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.0278843000.0354112
ROORoots from the seedlings (10 cm shoot stage)8.978847.651756.22477.52576
NODDeveloping tillers at six leaf stage, 3rd internode000.008513050.0210131
CAR5Developing grain, bracts removed (5 DPA)0.1064450.06816390.06408820.080861
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_54978






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54978.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359289NoneNoneNoneNone
MLOC_54978.1CUST_3331_PI427708080AvailableAvailablecontig_39548 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g49970.1 +3 2e-170 492 318/420 (76%) 13104.m05110 protein U-box, putative, expressed
TAIR PP10 AT2G35930.1 +3 4e-31 124 131/419 (31%) | Symbols: PUB23 | plant U-box 23 | chr2:15083101-15084336 REVERSE LENGTH=411