- Predicted Gene MLOC_54978
MLOC_54978 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 1.56301 | 1.26953 | 1.10058 | 1.24337 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 0.363225 | 0.453631 | 0.552088 | 0.343768 |
| INF1 | Young developing inflorescences (5mm) | 0 | 0 | 0 | 0 |
| INF2 | Developing inflorescences (1-1.5 cm) | 0.0278843 | 0 | 0 | 0.0354112 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 8.97884 | 7.65175 | 6.2247 | 7.52576 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0 | 0.00851305 | 0.0210131 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 0.106445 | 0.0681639 | 0.0640882 | 0.080861 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0 | 0 | 0 | 0 |
CDS Structure of MLOC_54978
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54978.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os04g49970.1 |
+3 |
2e-170 |
492 |
318/420 (76%) |
13104.m05110 protein U-box, putative, expressed |
| TAIR PP10 |
AT2G35930.1 |
+3 |
4e-31 |
124 |
131/419 (31%) |
| Symbols: PUB23 | plant U-box 23 | chr2:15083101-15084336 REVERSE LENGTH=411 |