MLOC_54969 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.118621.71041.246571.59737
LEAShoots from the seedlings (10 cm shoot stage)0.2257130.2443370.3904750.21845
INF1Young developing inflorescences (5mm)0.454620.1488560.1541440.219983
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)3.717371.389341.044441.62934
NODDeveloping tillers at six leaf stage, 3rd internode0.2067650.07401940.06985950.160546
CAR5Developing grain, bracts removed (5 DPA)0.07414890.08898450.1035620.0900701
CAR15Developing grain, bracts removed (15 DPA)0.01226750.014718700.0439661



CDS Structure of MLOC_54969






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54969.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366646NoneNoneNoneNone
MLOC_54969.1CUST_3328_PI427708080AvailableAvailablecontig_39542 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g53860.1 +2 0.0 682 431/779 (55%) 13102.m06162 protein OsSub22 - Putative Subtilisin homologue, expressed
TAIR PP10 AT3G14067.1 +2 0.0 570 376/756 (50%) Subtilase family protein | chr3:4658421-4660754 REVERSE LENGTH=777