- Predicted Gene MLOC_54966
MLOC_54966 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 72.5495 | 65.6067 | 74.921 | 66.686 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 86.1394 | 76.6788 | 79.5696 | 66.9355 |
| INF1 | Young developing inflorescences (5mm) | 19.5954 | 21.806 | 18.7405 | 16.3101 |
| INF2 | Developing inflorescences (1-1.5 cm) | 13.7823 | 14.6263 | 15.5088 | 15.7433 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 75.5472 | 85.7037 | 75.559 | 93.739 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 123.109 | 79.4673 | 58.189 | 241.471 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 53.9826 | 57.5545 | 54.5283 | 50.5603 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 36.0996 | 33.426 | 31.6839 | 73.8785 |
CDS Structure of MLOC_54966
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54966.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g37420.1 |
-2 |
3e-131 |
389 |
193/193 (100%) |
13102.m04097 protein ras-related protein, putative, expressed |
| TAIR PP10 |
AT4G17170.1 |
-2 |
2e-125 |
374 |
184/189 (97%) |
| Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644908-9646220 REVERSE LENGTH=211 |