MLOC_54966 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains72.549565.606774.92166.686
LEAShoots from the seedlings (10 cm shoot stage)86.139476.678879.569666.9355
INF1Young developing inflorescences (5mm)19.595421.80618.740516.3101
INF2Developing inflorescences (1-1.5 cm)13.782314.626315.508815.7433
ROORoots from the seedlings (10 cm shoot stage)75.547285.703775.55993.739
NODDeveloping tillers at six leaf stage, 3rd internode123.10979.467358.189241.471
CAR5Developing grain, bracts removed (5 DPA)53.982657.554554.528350.5603
CAR15Developing grain, bracts removed (15 DPA)36.099633.42631.683973.8785



CDS Structure of MLOC_54966






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54966.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250540.1NoneNoneNoneNone
MLOC_54966.1CUST_3327_PI427708080AvailableAvailablecontig_39537 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g37420.1 -2 3e-131 389 193/193 (100%) 13102.m04097 protein ras-related protein, putative, expressed
TAIR PP10 AT4G17170.1 -2 2e-125 374 184/189 (97%) | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644908-9646220 REVERSE LENGTH=211